Pycotools
master
  • PyCoTools
  • Getting started
    • Build a model with antimony
    • Create an antmiony string from an existing model
    • Simulate a time course
    • Visualise a time course
  • Tutorials
    • Running Time-Courses
      • Create a model
      • Deterministic Time Course
      • Visualization
        • Plot in Phase Space
        • Save to file
      • Alternative Solvers
        • Stochastic MM
      • Run a Time Course Using Direct Method
      • Plot stochastic time course
    • Insert Parameters
      • Build a demonistration model
      • Insert Parameters from Python Dictionary
      • Insert Parameters from Pandas DataFrame
      • Insert Parameters from Parameter Estimation Output
      • Insert Parameters using the model.Model().insert_parameters method
      • Change parameters using model.Model().set
    • Parameter Scan
      • Two Way Parameter Scan
      • Repeat Scan Items
    • Parameter Estimation Tutorial
      • Build a Model
      • Collect some experimental data
      • The Config Object
      • Running multiple parameter estimations
    • A shortcut for configuring the ParameterEstimation.Config object
  • Examples
    • Simple Parameter Estimation
    • Parameter estimation with multiple models
  • API documentation
    • The model module
      • pycotools3.model.Model
      • pycotools3.model.ImportSBML
      • pycotools3.model.InsertParameters
      • pycotools3.model.BuildAntimony
      • pycotools3.model.Build
    • The tasks module
      • pycotools3.tasks.TimeCourse
      • pycotools3.tasks.ParameterEstimation.Config
      • pycotools3.tasks.ParameterEstimation
      • pycotools3.tasks.ParameterEstimation.Context
      • pycotools3.tasks.Sensitivities
      • pycotools3.tasks.Scan
      • pycotools3.tasks.Reports
    • The viz module
      • pycotools3.viz.Parse
      • pycotools3.viz.PlotTimeCourse
      • pycotools3.viz.Boxplots
Pycotools
  • Docs »
  • Overview: module code

All modules for which code is available

  • pycotools3.cached_property
  • pycotools3.model
  • pycotools3.tasks
  • pycotools3.viz

© Copyright 2017, Ciaran Welsh Revision 76f2b1cd.

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