Pycotools
master
PyCoTools
Getting started
Build a model with antimony
Create an antmiony string from an existing model
Simulate a time course
Visualise a time course
Tutorials
Running Time-Courses
Create a model
Deterministic Time Course
Visualization
Plot in Phase Space
Save to file
Alternative Solvers
Stochastic MM
Run a Time Course Using Direct Method
Plot stochastic time course
Insert Parameters
Build a demonistration model
Insert Parameters from Python Dictionary
Insert Parameters from Pandas DataFrame
Insert Parameters from Parameter Estimation Output
Insert Parameters using the
model.Model().insert_parameters
method
Change parameters using
model.Model().set
Parameter Scan
Two Way Parameter Scan
Repeat Scan Items
Parameter Estimation Tutorial
Build a Model
Collect some experimental data
The Config Object
Running multiple parameter estimations
A shortcut for configuring the
ParameterEstimation.Config
object
Examples
Simple Parameter Estimation
Parameter estimation with multiple models
API documentation
The model module
pycotools3.model.Model
pycotools3.model.ImportSBML
pycotools3.model.InsertParameters
pycotools3.model.BuildAntimony
pycotools3.model.Build
The tasks module
pycotools3.tasks.TimeCourse
pycotools3.tasks.ParameterEstimation.Config
pycotools3.tasks.ParameterEstimation
pycotools3.tasks.ParameterEstimation.Context
pycotools3.tasks.Sensitivities
pycotools3.tasks.Scan
pycotools3.tasks.Reports
The viz module
pycotools3.viz.Parse
pycotools3.viz.PlotTimeCourse
pycotools3.viz.Boxplots
Pycotools
Docs
»
API documentation
»
The tasks module
»
pycotools3.tasks.ParameterEstimation.Context
Edit on GitHub
pycotools3.tasks.ParameterEstimation.Context
ΒΆ
Read the Docs
v: master
Versions
master
develop
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.